Impact of ALK variants on brain metastasis and treatment response in advanced NSCLC patients with oncogenic ALK fusion
Introduction
Anaplastic lymphoma kinase (ALK) gene rearrangements were first discovered in 2007 and account for 2–7% of non-small cell lung cancer (NSCLC) (1,2). Thereafter, several studies have established the role of crizotinib as standard of care in later line, 2nd line and first line setting of advanced NSCLC patients with ALK fusion (3-7). However, nearly all patients receiving crizotinib inevitably progress, with the majority of them presenting with disease progression in the central nervous system (CNS) (8). Several 2nd or 3rd generation ALK inhibitors such as ceritinib (9), alectinib (10,11), brigatinib (12) and lorlatinib (13) with better CNS penetration, were developed and have demonstrated superior efficacy over crizotinib for both extracranial and intracranial disease (14,15). Besides ALK inhibitors, pemetrexed-based chemotherapy is potentially more efficacious than other chemotherapy against lung cancer with ALK fusion (16). However, response to these treatments is heterogeneous and precisive strategies are needed to further improve the outcome of patients with ALK fusion.
Echinoderm microtubule-associated protein-like 4 (EML4) is the most common fusion partner to ALK. To date, 15 EML4-ALK variants have been identified. The most common are variant 1 [v1; exon 13 of EML4 fused to exon 20 of ALK (E13;A20)] and variant 3a/b [exon 6a/b of EML4 fused to exon 20 of ALK (E6a/b;A20)] (17,18). More and more evidences suggest that ALK fusion variants may have biologic and clinical implications in ALK-positive lung cancer (19-26). For example, Yoshida et al. found crizotinib had better efficacy in patients with EML4-ALK variant 1 than those with non-variant 1 (21). Furthermore, Lin et al. revealed that variant 3a/b were associated with G1202R, an ALK mutation that confers resistance to crizotinib and all 2nd generation ALK TKIs (e.g., ceritinib, alectinib and brigatinib), which suggested the link between ALK fusion variant and clinical outcome (25). Thus, analyzing ALK variants might help provide new insight in the era of precision medicine.
ALK gene rearranged lung cancer have a high incidence of BM and exploring the characteristics including ALK variants in ALK+ patients with baseline BM might help guide therapeutic strategy (8,16,27). Here, in order to have a better understanding of clinical impact of ALK variants on BM, we comprehensively investigated the association of ALK variants with the feature of brain metastasis, as well as the efficacy of crizotinib and chemotherapy in 135 Chinese advanced NSCLC patients with ALK fusions.
We present the following article in accordance with the STROBE Reporting Checklist (available at http://dx.doi.org/10.21037/tlcr-19-346).
Methods
The study was conducted in accordance with the Declaration of Helsinki (as revised in 2013) and was approved by the Ethics Committee of Shanghai Pulmonary Hospital, Tongji University School of Medicine (No. K18-089-1). Because of the retrospective nature of the research, the requirement for informed consent was waived.
Study population and study design
As shown in Figure 1A, we enrolled 235 patients with positive ALK-rearrangement from January 2013 to July 2017 in Shanghai Pulmonary Hospital. In total, 41 patients had confirmed BM at baseline. Among them, 8 patients had brain MRI data but were lack of evaluation of treatment response. This was due to either to be enrolled in double-blind clinical trials, or no further anti-cancer therapy, or lost follow-up. Therefore, 33 patients with baseline BM were included as a subgroup to compare time to treatment failure (TTF) and objective response rate (ORR) between variant 1 vs. non-variant 1 in both crizotinib-treated and chemo-treated settings. In addition, 6 out of the 41 patients had their BM confirmed in other hospitals but not ours. Therefore, only the remaining 35 patients with both the baseline BM and available MRI data were included as an exploratory subgroup to compare (I) radiological features; (II) neurological symptoms; (III) the graded prognostic assessment (GPA) score between variant 1 vs. non-variant 1.
Among 235 patients, 100 patients were excluded owing to either ineligible variant detection results (PCR product was not abundant to perform Sanger Sequencing), missing information on first-line lung cancer treatment (the patient made treatment decision at a peripheral hospital), or lack of survival data. Finally, 135 patients with either crizotinib or chemotherapy as their first-line treatment were included to compare (I) TTF and ORR; (II) progression pattern between variant 1 vs. non-variant 1 in both crizotinib-treated and chemo-treated groups.
Data reporting and acquisition
TTF was defined as the time from the start of crizotinib treatment or chemotherapy to the date of treatment discontinuation for any reason (including switching treatment strategy, death, whichever occurred first). ORR was calculated as percentage of patients with evaluated complete response (CR) or partial response (PR).
To investigate the progression pattern, patients enrolled in this study routinely got chest CT scan every 2 months, brain MRI every 6 months, bone scan every 6 months and abdominal ultrasound every 6 months. Any radiological examination was applied whenever related symptoms occurred.
Radiological features of BM
The brain images obtained by MRI were collected. All scans were performed on the same 1.5 Tesla MRI machine (United Imaging Health-care, Shanghai). Three variables were measured: (I) number of BMs; (II) size of BM; (III) sum of BM size; (IV) size of peritumoral brain edema (PTBE). For multiple brain tumors, the BM size was defined using the longest diameter of the largest lesion in one dimension on T1-weighed images. PTBE was defined as the subtraction of diameter measured on T1-weighed imaging from that measured on corresponding T2-weighed images (Figure 1B,C). If no edema was observed, the size of PTBE was defined as zero (Figure S1). The size of the tumor and PTBE were measured by two experienced oncologists and one radiologist, and averaged eventually.
Graded prognostic assessment (GPA)
The GPA is a validated assessment scale for lung cancer patients with BM (28). Four prognostic factors comprise the GPA: Karnofsky performance score (KPS) (0: KPS <70, 0.5: KPS =70–90, 1.0: KPS >90), age (0: age >60, 0.5: age =50–60, 1: age <50), presence of extracranial metastasis (ECM) (0: ECM yes or 1: ECM no), and the number of BM (0: >3 BM, 0.5: 2–3 BM,1: 1 BM). The GPA score showed good prognostic discrimination, and depending on the GPA score, lung cancer patients with BM in this study had a median overall survival (OS) ranging from 3.02 to 14.78 months (29).
Detection of ALK rearrangements and variants
The Amplification Refractory Mutation System (ARMS) was adopted to detect ALK fusion using the Human AmoyDx EML4-ALK Fusion Gene Diagnostic Kit (Amoy Diagnostics Co, Ltd). ALK variants were detected via Sanger sequencing of PCR product. The detailed procedures were performed as previously described (30-35).
Statistical analysis
All data were analyzed by using the Statistical Package for Social Science (SPSS) software (version 23.0 for Mac) and GraphPad Prism software (Version 6 for Mac). Differences in baseline clinical characteristics between groups (variant 1 vs. non-variant 1) were analyzed using Chi-square test or Fisher’s exact test. The Kaplan-Meier method was used to analyze the survival probability and log-rank test was used to calculate the significance of differences. Cox proportional hazard model was applied for the univariate and multivariate analyses to calculate the hazard rations (HR) and 95% confidence intervals (95% CI). P values in this article were two-sided and considered statistically significant when less than 0.05.
Results
Distribution of ALK variants and the association with clinical characteristics
In total, 135 patients with known ALK variant and medical record were analyzed. As shown in Figure 2A, the most frequent was ALK variant 1 (E13;A20) in 61 patients (45.2%), followed by variant 3a/b (E6;A20/E6ins33;A20) in 51 patients (37.8%) and variant 2 (E20;A20) in 17 patients (12.6%). Other variants included 3 patients with variant V5(5’) (E18;A20), 2 with variant 5a (E2;A20) and one with variant 8a/b (E17;A20) (Baseline characteristics of patients listed in Table 1). In the overall study cohort, median age was 53.4 (28 to 80) years old and 48.9% (66/135) were male, 73.3% (99/135) were never-smokers, 91.9% (124/135) had lung adenocarcinoma, and 8.1% (11/135) had recurrence after initial diagnosis of early stage disease. As first-line therapy, 51.9% (70/135) received chemotherapy and 48.1% (65/135) received crizotinib. Comparing the variant 1 and non-variant 1 cohorts, there were no significant differences observed with regard to age (P=0.500), gender (P=0.148), ECOG PS (P=0.183), histology (P=0.110), and smoking status (P=0.498). In total, 33/135(24.4%) patients had baseline BM before treatment. In the overall study cohort, 15/33 (45.4%) patients with BM, 4/14 (28.6%) patients with bone metastasis, and 6/12 (50%) patients with liver metastasis were variant 1. In our study cohort, there was no statistical significance in baseline incidence of metastasis between variant 1 and non-variant 1 (BM: P=0.971, bone metastasis: P=0.187, liver metastasis: P=0.726).
Full table
Radiological features associated with ALK variants in patients with baseline BM
In patients with BM, there was no statistical significance in clinical characteristics between variant 1 and non-variant 1 (Table S1). We further examined the radiological features according to ALK variants (proportion of patients with ≤3 BM, symptomatic BM at baseline, BM size, sum of BM size and PTBE) in patients with baseline BM (N=35) (Figure 2B). There was no significant difference in the proportion of patients with three BMs or less [11 (78.6%) patients in variant 1 subgroup and 16 (76.2%) patients in non-variant 1 subgroup]. Overall, 51.4% (18/35) ALK+ patients with baseline BM suffered from neurological symptoms, defined as headache, dizzy, nausea, vomiting, and etc. Of those cases, 64.3% (9/14) of patients with ALK variant 1 had neurological symptoms related to BMs compared to 42.8% (9/21) in the non-variant 1 group (P=0.21). In addition, the patients with ALK variant 1 had larger BM size (median BM size: 16.89 vs. 11.01 mm, P=0.031) and numerically higher CNS burden (30.32 vs. 21.98 mm, P=0.272) together with wider PTBE (17.94 vs. 12.80 mm, P=0.447) compared to patients with ALK non-variant 1. No significant difference was observed in constituent ratio of GPA score between two groups (P=0.934).
Full table
Impact of ALK-variants on efficacy of crizotinib
Patients who received crizotinib as first-line treatment strategy had longer TTF than those who had chemotherapy (median TTF: 13.8 vs. 6.3 months, HR =0.43, P<0.01, Figure 3A). There was no significant TTF difference between variant 1 and non-variant 1 in the subgroup treated with first-line crizotinib (Figure 3B). Both ORR and the DCR were not significantly different between variant 1 and non-variant 1 in the crizotinib-treated group (Table S2). Univariate and multivariate analysis showed that only ECOG PS and patient sex had a significant impact on TTF. None of the other variables including ALK variant were associated with TTF (Table 2).
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Full table
Patients with baseline BM had a median TTF of 12.7 months treated with crizotinib, compared to 7.1 months in the chemotherapy-treated group (P=0.017, Figure 3C). Patients with variant 1 and baseline BM had a significantly shorter TTF than non-variant 1 on first-line crizotinib (HR =2.68, P=0.037, Figure 3D). Regardless of first-line treatment strategy, patients with variant 1 and baseline BM had significantly lower ORR than patients with non-variant 1 (20% vs. 66.7%, P=0.007) and numerically lower in crizotinib-treated group (50.0% vs. 75.0%, P=0.596, Figure S2). In patients without baseline metastases, patients treated with crizotinib had median TTF of 15.7 months and no statistically significant difference in TTF was observed between variant 1 and non-variant 1 (median TTF: 17.0 vs. 12.8 months, HR 0.61, P=0.19) (Figure 3E,F).
Impact of ALK-variants on efficacy of chemotherapy
A total of 70 patients received chemotherapy as their first-line treatment strategy. Patients with ALK variant 1 had a significantly inferior TTF compared to those with ALK non-variant 1 (median TTF: 5.6 vs. 8.1 months, HR =1.66, P=0.039) (Figure 4A). In the subgroup receiving pemetrexed-based chemotherapy, patients with variant 1 had a TTF of 6.3 months, whereas patients with non-variant 1 had a TTF of 9.2 months (P=0.094) (Figure 4B). Otherwise, ORR and DCR were similar between variant 1 and non-variant 1 cohorts receiving first-line chemotherapy (Table S3). In the ALK variant 1 cohort, patients receiving 1st line chemotherapy (N=31) had numerically inferior TTF compared to non-variant 1, regardless of whether they had BM at baseline, but the difference was not statistically significant (P=0.12 and P=0.15, respectively, Figure 4C,D). Other than ECOG PS, only non-variant 1 status was significantly associated with a longer TTF in both univariate analysis (vs. variant 1, HR =0.579, P=0.043) and multivariate analysis (vs. variant 1, HR =0.470, P=0.009) (Table 3).
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Progression pattern according to variants
Patterns of disease progression were separated into five categories: CNS progression, liver progression, bone progression, intrathoracic progression and other extra-thoracic progression. Other extra-thoracic progression was defined as metastases occurring in the adrenal glands, spleen or extra-pulmonary lymph nodes. Overall, no significant difference in progression pattern was observed in variant 1 and non-variant 1 (Figure S3A). At the time of analysis, 55 patients who were once treated with crizotinib and 61 patients treated with chemotherapy exhibited progression of disease (PD), including 56 patients with ALK variant 1 (28 once received crizotinib; 28 received chemotherapy) and 60 patients with ALK non-variant 1 (first-line treatment: 27 received crizotinib; 33 received chemotherapy). However, there were no significant differences in the patients with intra-thoracic and extra-thoracic recurrence between the variant 1 and non–variant 1 group (Table S4, Figure S3B).
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Discussion
This real-world study collected the largest cohort of ALK positive patients and comprehensively investigated the association of ALK variants with brain metastases together with clinical outcomes on first-line crizotinib and chemotherapy. We observed more aggressive radiological features (larger BM size and numerically larger area of PTBE) in those with ALK variant 1 than non-variant 1. We found a numerically longer but not statistically significant difference of TTF in patients with ALK variant 1 and non-variant 1 in crizotinib-treated group (median TTF: 15.7 vs. 13.8 months, P=0.75), while subgroup analysis showed that patients with ALK-variant 1 and baseline BM had significantly shorter TTF (P=0.037). Additionally, patients with ALK non-variant 1 had longer TTF in the chemotherapy-treated group than patients with variant 1 (median TTF: 8.1 vs. 5.4 months, P=0.039; multivariate analysis: P=0.009).
As far as we know, this is the first report on the association of ALK variants with the radiologic features of BM. We found that the size of baseline metastasis in variant 1 group was larger than in non-variant 1 group (median TS: 16.89 vs. 11.01 mm, P=0.031) with numerically higher CNS burden and wider edema range. Additionally, patients with ALK variant 1 and baseline BM had a higher frequency (64.3%) of neurologic symptoms related to BM than patients with ALK-non variant 1 (42.8%). Previous studies demonstrated that the size of BM was positively associated with the thickness of PTBE and both factors were associated with worse survival outcome (36,37). Although statistical significance regarding the size of PTBE was not reached owing to the limited sample size, it is suggested that patients with ALK-variant 1 and baseline BM likely have more aggressive BM radiographically and might be related to the different efficacy of crizotinib in this study. Our subgroup analysis showed that patients with baseline BM and ALK-variant 1 had a significantly worse TTF than those with non-variant 1 (9.1 vs. 14.9 months, P=0.037) after the treatment of crizotinib.
The frequency of BM in treatment-naïve ALK+ NSCLC ranges from 20–40%. The clinical outcome of ALK+ patients with baseline BM receiving crizotinib varied across different studies (PFS range, 7.0–21.2 months) (6,7,38-40). It is conceivable that different ALK variant might explain the heterogeneity of treatment response in ALK patients with baseline BM. Although previous investigations including our current study indicated that variant 1 might have better crizotinib response than non-variant 1 but lack of significance (22,23,25), Yoshida, et al. did report a significantly longer PFS to crizotinib in patients with variant 1 (n=19) versus non-variant 1 (n=16) (median PFS: 11.0 vs. 4.2 months, P<0.05) (21). The inconsistency might be due to lower percentage of patients with baseline BM in Yoshida’s study (20%) comparing to other studies including ours (ranging from 26% to 44.4%) (22,23,25).
The most frequent ALK variants were variant 1 (45.2%) and variant 3a/b (35.8%), which was consistent with the findings from previous publications (Table S5). In consistent with previous studies (20-25), similar baseline clinical characteristics between different ALK variants were found in our study. Previous studies including ours found that the level of thymidylate synthetase (TS) was lower in ALK-positive tumors (41) and correlated with enhanced sensitivity to pemetrexed than ALK-wild type tumors (16,42). This present study found that ALK-non variant 1 had statistically significant longer TTF than ALK variant 1 in the chemotherapy-treated group (median TTF: 8.1 vs. 5.6 months, P=0.039) and possibly longer TTF than ALK variant 1 in the pemetrexed-treated group (median TTF: 9.2 vs. 6.3 months, P=0.094), although statistical significance for the latter comparison was not shown. In consistent with worse outcomes seen in ALK variant 1 patients treated with pemetrexed-based chemotherapy, an in-vitro study showed that the IC50 to pemetrexed was higher in ALK variant 1 cell line, H3122 (68.7±21.1 nM) than in an ALK variant 3a/b cell line, H2228 (33.0±10.7 nM) (42). Therefore, we hypothesized that in ALK-positive group with low TS expression, the delicate difference in level of TS might not be the critical factor that determined the efficacy to pemetrexed when we stratified the ALK-positive patients into different ALK variants.
Full table
This study has several limitations that need to be acknowledged. Firstly, although we analyzed the largest cohorts of patients harboring ALK aberrations, the sample size in the cohort of patients with BM was relatively small. Only 33 patients were enrolled for the analysis of survival outcome and 35 patients included for the analysis of radiological features. Secondly, it is a single-institution study. Thirdly, the impact of second and third generation ALK-TKIs with improved CNS penetration on clinical outcomes in different ALK variants were not examined in this study. Additionally, given the nature of retrospective study, many confounding factors might have impact on drawing a convincing conclusion. Finally, due to a limited sample size of some of the less common variant subtypes, we had to analyze non-variant 1 as a conglomerate cohort. Therefore, the results need to be interpreted with caution.
Conclusions
In summary, our findings provide a possible explanation for the discrepancy between studies on crizotinib efficacy among ALK variants—that ALK variant 1 with BM had inferior TTF than non-variant 1 with BM due to more aggressive and frequent BMs. Moreover, ALK non-variant 1 had longer TTF than variant 1 in the chemotherapy-treated group, which further strengthen the need to explore additional treatment strategies based on ALK variant in patients with ALK fusion.
Acknowledgments
We would like to thank Dr. Dong-wan Kim from Seoul National University for his critical comments on this study in 2018 World Conference on Lung Cancer held in Toronto, Canada.
Funding: This work was supported by grants from the National Natural Science Foundation of China (No. 81672286, 81871006, 81972169), National R&D projects (2016YFC0902300), Shanghai Science and Technology Medical Guidance Project (16411964400), Shanghai Science and Technology Innovative Project (19411950300).
Footnote
Reporting Checklist: The authors have completed the STROBE Reporting Checklist. Available at http://dx.doi.org/10.21037/tlcr-19-346
Data Sharing Statement: Available at http://dx.doi.org/10.21037/tlcr-19-346
Conflicts of Interest: All authors have completed the ICMJE uniform disclosure form (available at http://dx.doi.org/10.21037/tlcr-19-346). TJ serves as an unpaid editorial board member of Translational Lung Cancer Research from Feb 2018 to Feb 2021. CZ serves as an unpaid editorial board member of Translational Lung Cancer Research from Mar 2012 to Mar 2022. The other authors have no conflicts of interest to declare.
Ethical Statement: The authors are accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved. The study was conducted in accordance with the Declaration of Helsinki (as revised in 2013) and was approved by the Ethics Committee of Shanghai Pulmonary Hospital, Tongji University School of Medicine (No. K18-089-1). Because of the retrospective nature of the research, the requirement for informed consent was waived.
Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0/.
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