Rebuttal from Dr. Mino-Kenudson

First of all, I would like to congratulate Drs. Ilie and Hofman for their excellent discussion in support of the possibility of liquid biopsy to replace tissue biopsy. As they accurately pointed out, if validated for routine clinical use, liquid biopsy would overcome the following issues inherent to tissue biopsy: (I) inability of capturing the complete genomic landscape of the non-small cell lung cancer (NSCLC) patient that is attributed to inter- and intratumoral heterogeneity and/or often limited tumor accessibility due in part to poor performance status of the advanced NSCLC patient limiting the role of interventional procedures (1); (II) insufficient quantity and quality of tissue hampering molecular testing, in particular next generation sequencing (NGS) (2); (III) potential false positive results due to high levels of artificial C>T/G>A transitions induced by preservation methods such as formalin fixation (3); (IV) high cost of biopsy/FNA procedure and turn-around-time longer than expected.

As for the intra- and intertumoral heterogeneity issue, growing evidence suggests that cell-free tumor DNA (ctDNA) represents a molecular proxy of the overall disease. However, it remains to be formally proven that multiple metastatic sites located in different organs equally shed ctDNA, since apoptosis, among multiple mechanisms, likely produces the majority of ctDNA in circulation, and passive release of ctDNA from apoptotic or necrotic cells depends on various conditions including the location, size and vascularity of the tumor (4). Similarly, the insufficient quantity of DNA for molecular testing is an issue associated with not only small biopsy and FNA specimens but also ctDNA. Circulating DNA derived of the tumor varies greatly from <0.01% to >90% (5) and the amount of ctDNA is related to the tumor burden (5,6). Technically, the sensitivity of plasma genotyping assays is limited to 0.01%, and if the fraction of ctDNA in a sample is at or below 0.01%, it is considered negative for ctDNA (5,7). Thus, advanced stage tumors with low-level micrometastatic disease as well as early stage tumors that have lower numbers of ctDNA fragments (8) may have false negative results. In fact, while approximately 30% of small tissue samples are insufficient for molecular testing (2,9), the overall sensitivity of genotyping using cfDNA compared to tissue genotyping is approximately 70–75% (10,11). Given that liquid biopsy can be performed repeatedly during the entire disease course, which is also useful for an early detection of residual tumor and/or resistant clones, and it may be able to identify a subpopulation missed in a single tissue biopsy, genotyping of cfDNA could be complementary to tissue genotyping, but the imperfect sensitivity with the currently available assays appears to prevent liquid biopsy from replacing tissue biopsy.

Another issue associated with plasma genotyping is its inability to confidently diagnose and subtype lung cancer. As previously discussed, the lower number of ctDNA fragments in early stage tumors may be below the sensitivity of genotyping assays (5,7,8). Given that the recent advance in histology-directed therapy, the differentiation of squamous cell carcinoma from non-squamous cell carcinoma, in particular adenocarcinoma is of paramount importance. However, the low prevalence of molecular alterations associated with squamous cell carcinoma or adenocarcinoma hampers subtyping of lung cancer by plasma genotyping. Conversely, other elements of liquid biopsy, namely circulating micro-RNA (miRNA) and circulating tumor cells (CTCs), may play a role in diagnosis, subtyping and prognostic stratification of lung cancer. Multiple studies have reported on the potential utility of miRNAs to diagnose NSCLC (12), as well as to differentiate squamous cell carcinoma from adenocarcinoma in both tissue and plasma-based assays (13-15). The levels of CTCs have been shown to correlate with an advanced stage and patient outcomes in various stages of NSCLC (16), as well as response to therapy (17). In addition, CTCs could be used for fluorescence in situ hybridization and/or immunohistochemistry to evaluate biomarkers such as ALK rearrangements (17). Unfortunately, however, CTCs in NSCLC suffer from relatively low detection rates despite the recent improvements in CTC-capture technology, and there are no standard panels of miRNA markers or cutoffs for positivity that are applicable in routine practice (12).

In summary, minimally invasive liquid biopsy does have several advantages that complement tissue biopsy and holds promise in personalized therapy of NSCLC patients. However, there remain challenges/issues that need to be resolved before liquid biopsy can be fully implemented in routine clinical practice.

Acknowledgements

None.

Footnote

Conflicts of Interest: The author has no conflicts of interest to declare.

Comment on: Ilié M, Hofman P. Pros: Can tissue biopsy be replaced by liquid biopsy? Transl Lung Cancer Res 2016;5:420-3.

References

1. Piotrowska Z, Drapkin B, Engelman JA, et al. Plasma T790M Result Alters Treatment Options in a Previously T790 Wild-Type EGFR-Mutant Lung Cancer. J Thorac Oncol 2016;11:e95-7. [Crossref] [PubMed]
2. Sholl LM, Aisner DL, Varella-Garcia M, et al. Multi-institutional Oncogenic Driver Mutation Analysis in Lung Adenocarcinoma: The Lung Cancer Mutation Consortium Experience. J Thorac Oncol 2015;10:768-77. [Crossref] [PubMed]
3. Wong SQ, Li J, Tan AY, et al. Sequence artefacts in a prospective series of formalin-fixed tumours tested for mutations in hotspot regions by massively parallel sequencing. BMC Med Genomics 2014;7:23. [Crossref] [PubMed]
4. Diaz LA Jr, Bardelli A. Liquid biopsies: genotyping circulating tumor DNA. J Clin Oncol 2014;32:579-86. [Crossref] [PubMed]
5. Diehl F, Schmidt K, Choti MA, et al. Circulating mutant DNA to assess tumor dynamics. Nat Med 2008;14:985-90. [Crossref] [PubMed]
6. Dawson SJ, Tsui DW, Murtaza M, et al. Analysis of circulating tumor DNA to monitor metastatic breast cancer. N Engl J Med 2013;368:1199-209. [Crossref] [PubMed]
7. Li M, Diehl F, Dressman D, et al. BEAMing up for detection and quantification of rare sequence variants. Nat Methods 2006;3:95-7. [Crossref] [PubMed]
8. Diehl F, Li M, Dressman D, et al. Detection and quantification of mutations in the plasma of patients with colorectal tumors. Proc Natl Acad Sci U S A 2005;102:16368-73. [Crossref] [PubMed]
9. Inal C, Yilmaz E, Cheng H, et al. Effect of reflex testing by pathologists on molecular testing rates in lung cancer patients: Experience from a community-based academic center. J Clin Oncol 2014;32:abstr 8098.
10. Luo J, Shen L, Zheng D. Diagnostic value of circulating free DNA for the detection of EGFR mutation status in NSCLC: a systematic review and meta-analysis. Sci Rep 2014;4:6269. [Crossref] [PubMed]
11. Paweletz CP, Sacher AG, Raymond CK, et al. Bias-Corrected Targeted Next-Generation Sequencing for Rapid, Multiplexed Detection of Actionable Alterations in Cell-Free DNA from Advanced Lung Cancer Patients. Clin Cancer Res 2016;22:915-22. [Crossref] [PubMed]
12. Levy B, Hu ZI, Cordova KN, et al. Clinical Utility of Liquid Diagnostic Platforms in Non-Small Cell Lung Cancer. Oncologist 2016. [Epub ahead of print]. [Crossref] [PubMed]
13. Patnaik S, Mallick R, Kannisto E, et al. MiR-205 and MiR-375 microRNA assays to distinguish squamous cell carcinoma from adenocarcinoma in lung cancer biopsies. J Thorac Oncol 2015;10:446-53. [Crossref] [PubMed]
14. Powrózek T, Krawczyk P, Kowalski DM, et al. Plasma circulating microRNA-944 and microRNA-3662 as potential histologic type-specific early lung cancer biomarkers. Transl Res 2015;166:315-23. [Crossref] [PubMed]
15. Pu Q, Huang Y, Lu Y, et al. Tissue-specific and plasma microRNA profiles could be promising biomarkers of histological classification and TNM stage in non-small cell lung cancer. Thorac Cancer 2016;7:348-54. [Crossref] [PubMed]
16. Hofman V, Bonnetaud C, Ilie MI, et al. Preoperative circulating tumor cell detection using the isolation by size of epithelial tumor cell method for patients with lung cancer is a new prognostic biomarker. Clin Cancer Res 2011;17:827-35. [Crossref] [PubMed]
17. Ilie M, Long E, Butori C, et al. ALK-gene rearrangement: a comparative analysis on circulating tumour cells and tumour tissue from patients with lung adenocarcinoma. Ann Oncol 2012;23:2907-13. [Crossref] [PubMed]